, The genus Bacillus represents a large group of Grampositive bacteria. They are rod-shaped, endospore-forming, catalase-positive bacteria with aerobic or facultatively anaerobic metabolism. Bacillus spp. are exceptionally ubiquitous, since they can inhabit a large variety of ecological niches; they are found in soil, water, air, surfaces, and the rhizosphere of plants, as well as many other extreme environments (Fira et al., 2018). In general, rhizobacteria Bacillus strains antagonize phytopathogenic fungi through various mechanisms such as competition for niches (e.g., iron through siderophores synthesis) as well as parasitism, which may involve the production of hydrolytic enzymes such as chitinase, β-1,3-glucanase, protease, and cellulase, that lyse fungus cell walls. In addition, Bacillus strains cause inhibition of the pathogen by secreting antimicrobial compounds such as antibiotics, toxins, and biosurfactants, and the induction of systemic resistance in host plants (Kumar et al., 2012; Mohamed and Gomaa, 2012; Sofy et al., 2021).
Contrary to the common belief that Bacillus spp. are effective biocontrol agents, among members of this genus, there are numerous species that are pathogenic to plants. For example, B. macerans caused a decay of flax and wheat roots (Rempe and Sorokina, 1950). B. subtilis and B. licheniformis inhibited growth of some Egyptian cotton cultivars (Naim and Hussein, 1956). B. pumilus, B. subtilis, and B. polymyxa were reported to cause postharvest soft rot of vegetables (Chiu et al., 1964). Seedborne and soilborne strains of Bacillus sp. increased seed decay, reduced germination, reduced hypocotyl and radicle elongation and stunted seedling plants of soybean under extreme environmental conditions in both greenhouse and field trials (Suslow and Schroth, 1982). B. megaterium pv. cerealis caused wheat white blotch (Hosford, 1982). Gabr and Gazar (1983) reported that B. pumilus and B. polymyxa were causal pathogens of head rot of cabbage. B. polymyxa is the causal agent of bacterial seedling blight of tomato (Caruso et al., 1984). B. circulans caused a disease of date palm seedling in the greenhouse (Leary and Chun, 1989; Leary et al., 1986). B. pumilus, B. subtilis, B. coagulans, and B. polymyxa have been reported to be the main causal agents of garlic clove postharvest decay (Galal et al., 2002; Saleh, 1995). B. pumilus causes brown spots on fruits and leaves of Balady peach (Saleh et al., 1997). B. pumilus causes leaf blight of mango trees in Egypt (Galal et al., 2006). A Bacillus sp., identified as a possible B. pumilus strain, was associated with leaf and twig dieback of Asian pear trees in China (Li et al., 2009). B. pumilus also caused potato soft rot in storage (Bathily et al., 2010) and ginger rhizome rot (Peng et al., 2013). B. pumilus has a potential to cause the soft rot disease in pine seedling and symptoms of wetwood disorder in young Scot’s pine trees (Kovaleva et al., 2015). B. amyloliquefaciens caused bacterial rot of onion (Hwang et al., 2012) and black rot of arrowhead (Sagittaria sagittifolia L.) (Zhong et al., 2015). B. amyloliquefaciens also caused soft rot of potato tubers in the field (Wang et al., 2017).
In the present study, we evaluated the pathogenicity of eight Bacillus strains to seedlings of four cotton cultivars under greenhouse conditions. Effects of the tested strains on levels and activities of some biochemical components of the infected seedlings were also determined.
Materials and Methods
Source of cotton cultivars
Four cultivars of cotton (Gossypium barbadense L.) were used in the present study: V1 Giza 86; V2 Giza 87; V3 Giza 88; V4 Giza 90. Seeds of these cultivars were obtained from the Cotton Research Institute, Agricultural Research Center, Giza, Egypt.
Source of bacterial strains
Eight strains of Bacillus spp. were used in the present study (Table 1). The Bacillus strains originated from roots of cotton plants and were obtained from the bacterial collection of the Cotton Diseases Research Section, Plant Pathology Research Institute, Agricultural Research Center, Giza, Egypt. Bacterial strains were identified to the species level by standard bacteriological tests (Holt et al., 1994) (Supplementary Table 1).
Preparation of bacterial inoculum
The Bacillus strains were grown in nutrient glucose broth at 30ºC for 72 h in a shaker incubator. The growth was adjusted turbidimetrically to 108 cfu/ml using Spectro 2000 RSP 220 V, 50 Hz. Bacterial cultures were formulated in a powder form by mixing 400 ml of cell suspension with 1 kg talc as carrier, which was previously autoclaved for 30 min for 2 successive days; 10 grams of carboxy methyl cellulose were added to 1 kg of the carrier and mixed well. The pH of all materials was adjusted to 7.0 by adding calcium carbonate. The bacterial population was assessed as 4 × 107 cfu/g talc.
Pathogenicity of Bacillus strains to cotton cultivars
Autoclaved clay soil was dispensed into 15-cm-diameter clay pots. Slightly moist seeds of each of the tested cultivars were individually treated with the powdered inoculum of each bacterial strain at a rate of 10 g/kg seeds, and thoroughly shaken in plastic bags before being planted in the autoclaved soil at a rate of 10 seeds/pot. Untreated seeds were planted as control treatments in the autoclaved soil. The pots were randomly distributed on a greenhouse bench under a temperature regime that ranged from 25 ± 3 to 32 ± 4°C. The effects of Bacillus strains on cotton cultivars were evaluated 45 days after sowing by using the percentage of infection (combined pre-and post-emergence damping-off) and dry weight (mg/plant).
Biochemical studies
Determination of sugar content
Seedlings of treated and untreated cotton plants were pulverized in a mortar and pestle in 5 ml of 80% ethanol (v/v), then heated for 10 min and centrifuged for 10 min at 2,000 rpm. The total soluble sugars were measured using phenol sulfuric acid and the supernatant (Dubois et al., 1956). As a control, pure glucose was employed.
Determination of total soluble protein
The seedlings were powdered in a pH 6.5 sodium phosphate buffer. According to Lowry et al. (1951), the total soluble protein content in the supernatant was measured. The amount of total soluble protein was estimated using the Bovine Serum Albumin standard curve.
Determination of total free amino acids
Moore and Stein (1954) used the ninhydrin method to determine total free amino acid content in cotton seedlings pulverized in a mortar and pestle in 5 ml of 80% ethanol (v/v). The mixture was heated for 10 min and centrifuged at 2,000 rpm for 10 min, and the supernatant was collected.
Determination of enzymatic antioxidant
For peroxidase and polyphenoloxidase, cotton seedlings were crushed in a sodium phosphate buffer at pH 6.5. The activity of the following enzymes was measured in the supernatant. Peroxidase (EC 1.11.1.7) and polyphenol oxidase (EC 1.14.18.1) were measured using Kar and Mishra’s technique (Kar and Mishra, 1976).
Determination of total phenols
According to Dihazi et al. (2003), the levels of soluble phenols in cotton seedlings were measured by the absorbance at 725 nm. The amount of soluble phenols was represented as mg gallic acid/g fresh weight, with gallic acid as the reference.
Determination of malondialdehyde
The Heath and Packer (1968) method of calculating malondialdehyde (MDA) content was used to determine lipid peroxidation. At 532 nm and 600 nm, the absorbance of the resultant supernatant was measured. The extinction coefficient of 155/mM/cm was used to calculate the absorbance coefficient of MDA.
Statistical analysis
The experimental design of the present study was a randomized complete block with three replicates. Least significant difference (LSD) was used to compare means of Bacillus strains within each cotton cultivar. Analysis of variance (ANOVA) and correlation analysis were carried out by the MSTAT-C statistical package. Percentage data were transformed into arc sin angles before carrying out ANOVA to produce approximately constant variance.
Results
ANOVA (Table 2) showed that Bacillus strain was a very highly significant source of variation in damping-off and dry weight. Cotton cultivar was a nonsignificant source of variation in damping-off while it was a significant source of variation in dry weight. B × V interaction was a significant source of variation in damping-off and a nonsignificant source of variation in dry weight. Bacillus strain was the most important source of variation as it accounted for 59.36 and 64.99% of the explained (model) variation in damping-off and dry weight, respectively. Cultivar was the least important source of variation, as it accounted for 3.36 and 10.51% of the explained (model). B × V interaction was always the second in importance as a source of variation, as it accounted for 37.27 and 24.51% of the explained (model). Due to the significant B × V interaction as a source of variation in damping-off, an interaction LSD was used to evaluate the pathogenicity of Bacillus strains on cotton cultivars. The evaluation showed that B1, B2, and B8 were pathogenic only to V4 and nonpathogenic to the other cultivars. B3 and B4 were pathogenic to all the tested cultivars. On the contrary, B5, B6, and B7 were nonpathogenic on all cultivars (Table 3).
Due to the nonsignificant B × V interaction as a source of variation in dry weight, the general means were used to compare among Bacillus strains and among cultivars. These comparisons showed that B1 and B6 significantly reduced dry weight, B3 significantly increased dry weight, and the other strains did not significantly affect dry weight. The only significant difference among cultivars was observed between V2 and V4 (Table 3). A positive significant correlation was observed between damping-off and dry weight of all cultivars except V1 (Table 4).
Bacillus strain was a very highly significant source of variation in sugars, proteins, and amino acids, as it accounted for 48.95, 40.01, and 22.8%, respectively of the explained (model). Cultivar was a nonsignificant source of variation in sugars while it was very highly significant source of variation in proteins and amino acids as it accounted for 3.14, 6.50, and 10.41%, respectively of the explained (model). B × V interaction was always a very highly significant source of variation in all biochemical components as it accounted for 47.92, 53.50, and 66.78%, respectively of the explained (model). Bacillus strains and B × V interaction were almost equally important as sources of variation in sugars. B × V interaction was the most important source of variation in proteins and amino acids. Cultivar was the least important source of variation in all biochemical components (Table 5).
Due to the significant effect of V × B interaction as a source of variation in biochemical components, an interaction LSD was used to compare the effects of Bacillus strain on levels of biochemical components within each cultivar. This comparison showed that the differences in biochemical components and the control were not the same for each cultivar. Cultivars responded differently to the application of Bacillus strains. For example, B4 significantly increased sugar content of V1 while it did not affect sugar content of V3. The significant B × V interaction also indicated that the differences between strains may vary depending on the tested cultivar. For instance, the difference between B3 and B4 in sugar content was significant in V1 and non-significant in V2 (Table 6).
B2 significantly increased protein content of V1 while it did not affect protein content of V2. The difference between B2 and B3 was significant in V1 and nonsignificant in V2 (Table 6). B3 significantly increased amino acid content of V1 while it did not affect amino acid content of V2. The difference between B1 and B2 was significant in V1 and nonsignificant in V2 (Table 6). Each Bacillus strain and the B × V interaction were very highly significant sources of variation in activities of peroxidase and polyphenol oxidase. Cultivar was a highly significant and/or a significant source of variation in activities of peroxidase and polyphenol oxidase, respectively (Table 7).
Each Bacillus strain and the B × V interaction were very highly significant sources of variation in contents of phenols and lipid peroxidation. Cultivar was a nonsignificant source of variation in phenol content while it was a very highly significant source of variation in lipid peroxidation content (Table 8). Bacillus strain was the first in importance as a source of variation in polyphenol oxidase activity, phenol content, and lipid peroxidation content as it accounted for 56.24, 61.22, and 50.10%, respectively of the explained (model). B × V interaction was the first in importance as a source of variation in peroxidase activity as it accounted for 50.20% of the explained (model), while it was the second in importance as a source of variation in the other variables. Cultivar was always the least important source of variation in peroxidase, polyphenol oxidase, phenol and lipid peroxidation, as it accounted for 6.25, 3.52, 3.04, and 7.80%, respectively of the explained (model).
B4 significantly increased peroxidase activity in V1 while it did not significantly affect its activity in V2. The difference between B5 and B8 in peroxidase activity was significant in V1 and nonsignificant in V2 (Table 9). B1 significantly increased polyphenol oxidase activity in V1 while it did not affect its activity in V2. The difference between B4 and B8 in polyphenol oxidase activity was nonsignificant in V1 and significant in V4 (Table 9). B1 significantly increased phenol content of V1 while it did not affect phenol content of V2. The difference between B4 and B8 in phenol content was nonsignificant in V1 and significant in V4 (Table 10). B2 significantly increased lipid peroxidation content in V1 while it did not affect its content in V2. The difference between B1 and B2 in lipid peroxidation content was significant in V1 and nonsignificant in V2 (Table 10). Data shown in Table 11 indicated the lack of significant correlation between damping-off incidence and any of the tested components.
Discussion
Plant bacterial diseases are generally characterized by plant morphological aberrations such as leaf and fruit spots, cankers, blights, vascular wilts, rots, and tumors. Phytopathogenic bacteria provoke diseases in plants by penetrating into host tissues (Buonaurio, 2008). Microbial pathogenicity has often been defined as the biochemical mechanisms whereby pathogenic microorganisms cause disease in a host organism (Fuchs, 1998). Microbial virulence is defined as the degree or measure of pathogenicity shown by one or more plants. Pathogenicity and/or virulence of Gram-negative plant pathogenic bacteria are strictly dependent on the production of secretion apparatuses in their cells, through which they secrete proteins or nucleoproteins involved in their virulence within the apoplast or inject these substances into host cells (Buonaurio, 2008). Bacteria colonize a host by growing between the cells and absorbing the cells nutrients that leak into intercellular space or grow within the vascular tissue of the plant. Depending on the species of bacteria and the tissue infected they can produce enzymes that degrade cell walls, growth regulators that alter the plants normal growth, toxins that degrade cell membranes and complex sugars that plug water conducting tissue (Agrios, 2005).
The infected seedlings in this study showed growth retardation, root discoloration, wilting, necrotic reactions, distortions of leaves and roots, or stunting of plants as reported by Schippers et al. (1987). High pathogenicity of Bacillus strains reduced the number of surviving seedlings in pots, which was accompanied with a high dry weight due to the low level of competition among seedlings in these pots. Vascular wilts caused by bacteria primarily affect herbaceous plants such as vegetables, field crops, ornamentals, and some tropical plants. The causal pathogen enters, multiplies in, and moves through the xylem vessels of the host plant and interferes with the translocation of nutrients and water by producing gum. The pathogen will often destroy parts of the cell wall of the xylem vessels resulting in pockets of bacteria, gums, and cellular debris. The symptoms of bacterial wilt disease include wilting and death of the aboveground parts of the plant. In some cases, bacterial ooze seeps out through stomata or cracks onto the surface of infected leaves. Usually, this ooze does not occur until the infected plant tissue is dead (Agrios, 2005).
Hence, the observed positive correlation between damping-off and dry weight of all cultivars except V1. However, this interpretation does not rule out the possibility that the increases in dry weight of cotton seedling could be attributed to the biomass of the Bacillus cells especially if one takes into account that Bacillus strains accounted for 64.99% of the total variation in dry weight. It has been suggested that a variety of substances contained in plant cells are involved in resistance or susceptibility to infection by pathogens. Among these are sugars (Bezrutezyk et al., 2018), proteins (Strange, 2003), amino acids (Aly et al., 2008), peroxidase (Agrios, 2005), polyphenol oxidase (Agrios, 2005), phenols (Agrios, 2005), and MDA as indicated for lipid peroxidation (Göbel et al., 2003).
As far as we know, the effects of pathogenic Bacillus strains on these components in infected cotton seedlings have never been reported. Therefore, in the present study, we evaluated levels and activities of these components in infected cotton seedlings as well as their potential roles in susceptibility of cotton seedlings to pathogenic strains of Bacillus. Sugars are the primary photosynthetic products forming the building blocks for all other chemical constituents of plants. The reduction in total soluble sugars in cotton seedlings treated with some Bacillus strains may be due to a reduction in net Co2 assimilation due to the changes in stomatal conductance and intercellular Co2 concentration. On the other hand, the increase in soluble sugars may be due to the increase in photosynthetic activity in cotton seedlings (Mohamed and Akladious, 2017).
Currently, there are two hypothetical models for how sugars influence plant resistance to pathogens. The first hypothesis (pathogen starvation) is the simplest: that pathogens infect plants with the primary goal of gaining access to resources (sucrose) needed for reproduction, a process that proceeds from a few cells at the time of infection to billions of bacteria when symptoms become apparent. There is no doubt that host-derived sugars are transferred to the pathogen, at least in the case of fungi. This hypothesis depends on the assumption that apoplasmic sugar pools are low, thereby limiting pathogen growth (Sutton et al., 1999). An alternative is the sugar signaling hypothesis, in which altered levels of sugar in the infection site trigger signaling cascades that result in salicylic acid pathway activation and defense gene upregulation, ultimately generating physiological changes that repel pathogens (Gebauer et al., 2017). On the other hand, sugars themselves can act as signals that induce defense genes (Gebauer et al., 2017), supporting a sugar signaling hypothesis.
In the present study, we assessed proteins in infected cotton seedlings after the appearance of early disease symptoms. It seems likely that the assessed proteins included both constitutive proteins and pathogenesis-related proteins, which are induced in response to pathogen attack. Constitutive protein has a role to play in plant defense through a variety of mechanisms. For instance, it may affect the structural components of the pathogen wall or interferes with the synthesis of pathogen wall. It may also destabilize the pathogen membrane (Strange, 2003). On the other hand, pathogenesis-related proteins show strong antifungal activity. For example, some of them inhibit spore release and germination whereas others are associated with strengthening of the host cell wall and its outgrowth and papillae (Agrios, 2005). Proteins secreted by bacteria are transported via molecular systems out of bacterial cells; unrelated virulence factors often share the same secretion mechanism (Fuchs, 1998). Bacterial pathogenicity depends upon bacterial secretion systems (types i-iv), quorum sensing, plant cell wall degrading enzymes, toxins, hormones, polysaccharides, proteinases, siderophores, and melanin. All of these systems and substances, which are essential for pathogenic infection and virulence, are produced by pathogens during bacterial pathogen-plant interactions (Agrios, 2005). They are all regulated by proteins through signal transduction systems.
The relationship between amino acids and resistance to plant diseases is well documented in a large body of literature. For example, El-Hamalawy and Menge (1995) found that the total free amino acid content of the avocado bark tissue was highly correlated with canker size on stem (r = 0.89) caused by Phytophthora citricola. Through correlations and path coefficient analysis of a field trial with peas cv. Rachana (resistant) and T163 susceptible, Bhattcharya and Shukla (1996) concluded that severity of powdery mildew (Erysiphe polygoni) on field pea is substantially increased by the accumulation of free amino acids. Omokolo et al. (2002) found a significant negative correlation (r = −0.65, P ≤ 0.05) between the level of amino acids in cacao (Theobroma cacao L.) pods and the lesion size caused by P. megakarya.
The importance of peroxidase in disease resistance stems from its property to oxidize phenolic compounds to quinones and semiquinones, which are often more toxic to pathogens than the original phenols. Peroxidase not only oxidizes phenolics but also increases the rate of polymerization of such compounds into lignin-like substances, which are deposited in cell walls and papillae and interfere with the growth and development of the pathogen (Agrios, 2005; Mohamed and Abd-El Hameed, 2014; Mohamed et al., 2016; Hussain et al., 2022). Direct antifungal effects of peroxidase on spore germination and mycelial growth have also been demonstrated (Joseph et al., 1998). Thus, it was reasonable to find a significant and negative correlation between peroxidase activity and severity of flax powdery mildew (Mohamed et al., 2012). Polyphenoloxidase is an enzyme of broad distribution among plants. Most of the reports on polyphenoloxidase indicated a function to defence plants against pathogens. The mode of action proposed for polyphenoloxidase is based on its capacity to catalyze the hydroxylation of monophenols to diphenols and their oxidation to diquinones (Aly et al., 2012a, 2012b, 2013; Helmi and Mohamed, 2016; Mansour et al., 2020). The quinones formed may act in several ways leading to protection of plants (El-Beltagi et al., 2019; Melo et al., 2006). Thus, polyphenoloxidase showed a significant and negative correlation with disease severity (Avtar et al., 2003, Gawande et al., 2002; Mohamed et al., 2012; Rao et al., 2007).
It is well known that the toxic effect of most phenolics is attributed mainly to their interaction with lipids or phospholipids, causing an increase in pathogen membrane permeability, leakage of cell contents, and cytoplasm aggregation (Dallagnol et al., 2011). Thus, an increase in the levels of post-infection phenolic compounds in host tissues may enhance resistance against infection by pathogen (Ashry et al., 2018; Avtar et al., 2003; Mohamed et al., 2012; Rao et al., 2007; Satisha et al., 2008). The MDA produced during lipid peroxidation is an indicator of cellular damage. It is well known that lipid peroxidation in the plasma membrane of cell wall by reactive oxygen species is caused by the occurrence of any type of stress to the cells (Abd El-Rahman and Mohamed, 2014; Abd El-Rahman et al., 2012; Dallagnol et al., 2011). MDA showed significant positive correlation with severity of flax powdery mildew (Mohamed et al., 2012).
In the present study, the lack of significant correlation between levels and activities of the measured biochemical components and incidence of damping-off, regardless of cultivar, after the application of Bacillus strains clearly demonstrated that these components were not involved in the pathogenicity of the tested strains to cotton seedlings. Therefore, other mechanisms for pathogenicity should be considered. A large number of enzymes with the potential to harm plant cell walls have been identified in the genus Bacillus like xylanase, pectate lyase, β-1,4-endoglucanase, and other pectinolytic and cellulolytic enzymes (Peng et al., 2013). Therefore, it seems reasonable to hypothesize that pathogenicity of the tested Bacillus strains might be due to the production of certain cell wall degrading enzymes.
Alternatively, the pathogenicity of Bacillus strains could be attributed to the production of pathogenic toxins. Some specific pathogenicity factors enable these bacteria to spread disease in the plants. Five major types of factors are well known in this regard. These factors are effector proteins, cell wall degrading enzymes, exopolysaccharides, phytohormones, and toxins (Abu-Shahba et al., 2021; Gagne-Bourgue et al., 2013). Deleterious rhizobacteria (DRB) are rhizosphere bacteria that affect plants by their metabolites without parasitizing plant tissue. Bacillus spp. are among rhizobacteria that conform to this definition. DRB induce growth retardation, root discoloration, wilting, necrotic reactions, distortions of leaves and roots, or stunting of plants (Schippers et al., 1987).
The incidence of damping-off of cotton seedlings traditionally has been attributed to fungal infections, and pathogenicity of several fungi has been demonstrated (Watkins, 1981). To our knowledge, no attempts have been made to identify organisms other than fungi, and usually bacteria that are detected are treated as contaminants.
Based on the results of the present study, we believe that rhizobacteria in particular Bacillus spp. can play an important role in the incidence of cotton damping-off disease, and it is likely that, with more comprehensive isolation, a greater involvement of rhizobacteria in the etiology of cotton damping-off will be demonstrated.
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