Altschul, S. F., Gish, W., Miller, W., Myers, E. W. and Lipman, D. J. 1990. Basic local alignment search tool.
J. Mol. Biol. 215:403-410.
Berendsen, R. L., Pieterse, C. M. J. and Bakker, P. A. H. M. 2012. The rhizosphere microbiome and plant health.
Trends Plant Sci. 17:478-486.
Cai, Q., Zhou, G., Ahmed, W., Cao, Y., Zhao, M., Li, Z. and Zhao, A. 2021. Study on the relationship between bacterial wilt and rhizospheric microbial diversity of flue-cured tobacco cultivars.
Eur. J. Plant Pathol. 160:265-276.
Caporaso, J. G., Lauber, C. L., Walters, W. A., Berg-Lyons, D., Lozupone, C. A., Turnbaugh, P. J., Fierer, N. and Knight, R. 2011. Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample.
Proc. Natl. Acad. Sci. U. S. A. 108:Suppl 1. 4516-4522.
Chaparro, J. M., Sheflin, A. M., Manter, D. K. and Vivanco, J. M. 2012. Manipulating the soil microbiome to increase soil health and plant fertility.
Biol. Fertil. Soils 48:489-499.
Classen, A. T., Sundqvist, M. K., Henning, J. A., Newman, G. S., Moore, J. A. M., Cregger, M. A., Moorhead, L. C. and Patterson, C. M. 2016. Direct and indirect effects of climate change on soil microbial and soil microbial-plant interactions: what lies ahead?
Ecosphere 6:1-21.
Edgar, R. C. 2013. UPARSE: highly accurate OTU sequences from microbial amplicon reads.
Nat. Methods 10:996-998.
Garbeva, P., van Veen, J. A. and van Elsas, J. D. 2004. Microbial diversity in soil: selection microbial populations by plant and soil type and implications for disease suppressiveness.
Annu. Rev. Phytopathol. 42:243-270.
He, Y. and Xue, L. 2005. Biological effects of rare earth elements and their action mechanisms. J. Appl. Ecol. 16:1983-1989 (in Chinese).
Huang, K., Jiang, Q., Liu, L., Zhang, S., Liu, C., Chen, H., Ding, W. and Zhang, Y. 2020. Exploring the key microbial changes in the rhizosphere that affect the occurrence of tobacco root-knot nematodes.
AMB Express 10:72.
Janvier, C., Villeneuve, F., Alabouvette, C., Edel-Hermann, V., Mateille, T. and Steinberg, C. 2007. Soil health through soil disease suppression: Which strategy from descriptors to indicators?
Soil Biol. Biochem. 39:1-23.
Kim, B.-S., French, E., Caldwell, D., Harrington, E. J. and Iyer-Pascuzzi, A. S. 2016. Bacterial wilt disease: host resistance and pathogen virulence mechanisms.
Physiol. Mol. Plant Pathol. 95:37-43.
Kinkel, L. L., Bakker, M. G. and Schlatter, D. C. 2011. A coevolutionary framework for managing disease-suppressive soils.
Annu. Rev. Phytopathol. 49:47-67.
Kuang, C. F., He, Z. M., Tang, R. Y., Huang, S. Y. and Deng, F. X. 2003. Determination of microbial number and physiological strains in soil infected with bacterical wilt. Chin. Tob. Sci. 24:43-45 (in Chinese).
Lawson, C. E., Harcombe, W. R., Hatzenpichler, R., Lindemann, S. R., Löffler, F. E., O’Malley, M. A., García Martín, H., Pfleger, B. F., Raskin, L., Venturelli, O. S., Weissbrodt, D. G., Noguera, D. R. and McMahon, K. D. 2019. Common principles and best practices for engineering microbiomes.
Nat. Rev. Microbiol. 17:725-741.
Li, Y. Y., Wang, L., Peng, W. X. and Li, X. H. 2020. Analysis of the changing trend of microbial community in rhizosphere soil during different stages of tobacco bacterial wilt infection. Chin. Tob. Sci. 41:73-78 (in Chinese).
Liu, X. L. 2011. Infection mechanism of Paecilomyces lilacinus strains on Meloidogyne incognita. PhD thesis. Anhui Agricultural University, Hefei, China. (in Chinese).
Liu, X., Zhang, S., Jiang, Q., Bai, Y., Shen, G., Li, S. and Ding, W. 2016. Using community analysis to explore bacterial indicators for disease suppression of tobacco bacterial wilt.
Sci. Rep. 6:36773.
Liu, Y. X., Li, X., Cao, Y., Ning, L. U. and Shi, J. X. 2014. Field control efficiency of tobacco specific bio-organic fertilizer on tobacco bacterial wilt. J. Plant Nutr. Fertil. 20:1203-1211 (in Chinese).
Martins, L. F., Kolling, D., Camassola, M., Dillon, A. J. P. and Ramos, L. P. 2008. Comparison of
Penicillium echinulatum and
Trichoderma reesei cellulases in relation to their activity against various cellulosic substrates.
Bioresour. Technol. 99:1417-1424.
Mendes, L. W., Tsai, S. M., Navarrete, A. A., de Hollander, M., van Veen, J. A. and Kuramae, E. E. 2015. Soil-borne microbiome: linking diversity to function.
Microb. Ecol. 70:255-265.
Mendes, R., Garbeva, P. and Raaijmakers, J. M. 2013. The rhizosphere microbiome: significance of plant beneficial, plant pathogenic, and human pathogenic microorganisms.
FEMS Microbiol. Rev. 37:634-663.
Nannipieri, P., Ascher, J., Ceccherini, M. T., Landi, L., Pietramellara, G. and Renella, G. 2003. Microbial diversity and soil functions.
Eur. J. Soil Sci. 54:655-670.
Navarrete, A. A., Kuramae, E. E., de Hollander, M., Pijl, A. S., van Veen, J. A. and Tsai, S. M. 2013. Acidobacterial community responses to agricultural management of soybean in Amazon forest soils.
FEMS Microbiol. Ecol. 83:607-621.
Philippot, L., Raaijmakers, J. M., Lemanceau, P. and van der Putten, WH. 2013. Going back to the roots: the microbial ecology of the rhizosphere.
Nat. Rev. Microbiol. 11:789-799.
Purahong, W., Wubet, T., Lentendu, G., Schloter, M., Pecyna, M. J., Kapturska, D., Hofrichter, M., Krüger, D. and Buscot, F. 2016. Life in leaf litter: novel insights into community dynamics of bacteria and fungi during litter decomposition.
Mol. Ecol. 25:4059-4074.
Raaijmakers, J. M., Paulitz, T. C., Steinberg, C., Alabouvette, C. and Moënne-Loccoz, Y. 2009. The rhizosphere: a playground and battlefield for soilborne pathogens and beneficial microorganisms.
Plant Soil 321:341-361.
Raghavendra, A. K. H., Bissett, A. B., Thrall, P. H., Morin, L., Steinrucken, T. V., Galea, V. J., Goulter, K. C. and van Klinken, R. D. 2017. Characterisation of above-ground endophytic and soil fungal communities associated with dieback-affected and healthy plants in five exotic invasive species.
Fungal Ecol. 26:114-124.
Salanoubat, M., Genin, S., Artiguenave, F., Gouzy, J., Mangenot, S., Arlat, M., Billault, A., Brottier, P., Camus, J. C., Cattolico, L., Chandler, M., Choisne, N., Claudel-Renard, C., Cunnac, S., Demange, N., Gaspin, C., Lavie, M., Moisan, A., Robert, C., Saurin, W., Schiex, T., Siguier, P., Thébault, P., Whalen, M., Wincker, P., Levy, M., Weissenbach, J. and Boucher, C. A. 2002. Genome sequence of the plant pathogen
Ralstonia solanacearum.
Nature 415:497-502.
Sharma-Poudyal, D., Schlatter, D., Yin, C., Hulbert, S. and Timothy, P. 2017. Long-term no-till: a major driver of fungal communities in dryland wheat cropping systems.
PLoS ONE 12:e0184611.
She, S., Niu, J., Zhang, C., Xiao, Y., Chen, W., Dai, L., Liu, X. and Yin, H. 2017. Significant relationship between soil bacterial community structure and incidence of bacterial wilt disease under continuous cropping system.
Arch Microbiol. 199:267-275.
van Elsas, J. D., Garbeva, P. and Salles, J. 2002. Effects of agronomical measures on the microbial diversity of soils as related to the suppression of soil-borne plant pathogens.
Biodegradation 13:29-40.
Wang, R., Zhang, H., Sun, L., Qi, G., Chen, S. and Zhao, X. 2017. Microbial community composition is related to soil biological and chemical properties and bacterial wilt outbreak.
Sci. Rep. 7:343.
Wei, Z. 2012. Effect and mechanism of bio organic fertilizer on controlling soil borne tomato bacterial wilt. PhD thesis. Nanjing Agricultural University, Nanjing, China. (in Chinese).
Yang, S. J., Lei, L. P., Zhu, M. L., Xia, Z. Y. and Li, Y. H. 2004. Screening of the parasitical fungi of root knot nematode in tobacco. Southwest Chin. J. Agric. Sci. 17:151-154 (in Chinese).
Yuliar Nion, Y. A. and Toyota, K. 2015. Recent trends in control methods for bacterial wilt diseases caused by
Ralstonia solanacearum.
Microbes Environ. 30:1-11.
Zhang, W. N., Jia, J., Lu, X. Y., Chen, Z. J., Kong, Q. and Chen, Z. 2013. Research progress of Fusarium mycotoxins. Guangdong Agric. Sci. 40:130-133 (in Chinese).
Zheng, Y. X., Yang, M., Wang, J. M., Xu, Y. L., Cai, X. J., Huang, F. Y., Tong, W. J., Chen, X. L., Yu, L. and He, Y. S. 2021. Effects of tobacco root rot on fungal community structure in tobacco rhizosphere soil. Chin. Tob. Sci. 42:50-55 (in Chinese).
Zhou, X. J., Wang, J., Yang, Y. W., Zhao, T. C. and Gao, B. D. 2012. Advances in tobacco bacterial wilt disease. Microbiol. China 39:1479-1486 (in Chinese).