Afrin, K. S., Rahim, M. A., Jung, H.-J., Park, J.-I., Kim, H.-T. and Nou, I.-S. 2019. Development of molecular marker through genome realignment for specific detection of
Xanthomonas campestris pv.
campestris race 5, the pathogen of black rot disease.
J. Microbiol. Biotechnol. 29:785-793.
Afrin, K. S., Rahim, M. A., Rubel, M. H., Natarajan, S., Song, J.-Y., Kim, H.-T., Park, J.-I. and Nou, I.-S. 2018. Development of race-specific molecular marker for
Xanthomonas campestris pv.
campestris race 3, the causal agent of black rot of crucifers.
Can. J. Plant Sci. 98:1119-1125.
An, S.-Q., Lu, G.-T., Su, H.-Z., Li, R.-F., He, Y.-Q., Jiang, B.-L., Tang, D.-J. and Tang, J.-L. 2011. Systematic mutagenesis of all predicted
gntR genes in
Xanthomonas campestris pv.
campestris reveals a GntR family transcriptional regulator controlling hypersensitive response and virulence.
Mol. Plant.-Microbe. Interact. 24:1027-1039.
Arias, R. S., Nelson, S. C. and Alvarez, A. M. 2000. Effect of soil-matric potential and phylloplanes of rotation-crops on the survival of a bioluminescent Xanthomonas campestris pv. campestris. Eur. J. Plant Pathol. 106:109-116.
Berg, T., Tesoriero, L. and Hailstones, D. L. 2005. PCR-based detection of
Xanthomonas campestris pathovars in Brassica seed.
Plant Pathol. 54:416-427.
Bogdanove, A. J., Koebnik, R., Lu, H., Furutani, A., Angiuoli, S. V, Patil, P. B., Van Sluys, M.-A., Ryan, R. P., Meyer, D. F., Han, S.-W., Aparna, G., Rajaram, M., Delcher, A. L., Phillippy, A. M., Puiu, D., Schatz, M. C., Shumway, M., Sommer, D. D., Trapnell, C., Benahmed, F., Dimitrov, G., Madupu, R., Radune, D., Sullivan, S., Jha, G., Ishihara, H., Lee, S.-W., Pandey, A., Sharma, V., Sriariyanun, M., Szurek, B., VeraCruz, C. M., Dorman, K. S., Ronald, P. C., Verdier, V., Dow, J. M., Sonti, R. V., Tsuge, S., Brendel, V. P., Rabinowicz, P. D., Leach, J. E., White, F. F. and Salzberg, S. L. 2011. Two new complete genome sequences offer insight into host and tissue specificity of plant pathogenic
Xanthomonas spp.
J. Bacteriol. 193:5450-5464.
Bolot, S., Cerutti, A., Carrère, S., Arlat, M., Saux, M., Portier, P., Poussier, S., Jacques, M.-A. and Noël, L. D. 2015. Genome sequences of the Race 1 and Race 4
Xanthomonas campestris pv.
campestris strains CFBP 1869 and CFBP 5817.
Genome Announc. 3:e01023-15.
Bolot, S., Guy, E., Carrere, S., Barbe, V., Arlat, M. and Noël, L. D. 2013a. Genome sequence of
Xanthomonas campestris pv.
campestris strain Xca5.
Genome Announc. 1:e00032-12.
Bolot, S., Roux, B., Carrere, S., Jiang, B.-L., Tang, J.-L., Arlat, M. and Noël, L. D. 2013b. Genome sequences of three atypical
Xanthomonas campestris pv.
campestris strains, CN14, CN15, and CN16.
Genome Announc. 1:e00465-13.
Chidamba, L. and Bezuidenhout, C. C. 2012. Characterisation of
Xanthomonas campestris pv.
campestris isolates from South Africa using genomic DNA fingerprinting and pathogenicity tests.
Eur. J. Plant Pathol. 133:811-818.
Cook, A. A., Walker, J. C. and Larson, R. H. 1952. Studies on the disease cycle of black rot of crucifers. Phytopathology. 42:162-167.
Cruz, J., Tenreiro, R. and Cruz, L. 2017. Assessment of diversity of Xanthomonas campestris pathovars affecting cruciferous plants in Portugal and disclosure of two novel X. campestris pv. campestris races. J. Plant Pathol. 99:403-414.
da Silva, A. C. R., Ferro, J. A., Reinach, F. C., Farah, C. S., Furlan, L. R., Quaggio, R. B., Monteiro-Vitorello, C. B., Van Sluys, M. A., Almeida, N. F., Alves, L. M. C., Amaral, A. M., Bertolini, M. C., Camargo, L. E. A., Camarotte, G., Cannavan, F., Cardozo, J., Chambergo, F., Ciapina, L. P., Cicarelli, R. M. B., Coutinho, L. L., Cursino-Santos, J. R., El-Dorry, H., Faria, J. B., Ferreira, A. J. S., Ferreira, R. C. C., Ferro, M. I. T., Formighieri, E. F., Franco, M. C., Greggio, C. C., Gruber, A., Katsuyama, A. M., Kishi, L. T., Leite, R. P., Lemos, E. G. M., Lemos, M. V. F., Locali, E. C., Machado, M. A., Madeira, A. M. B. N., Martinez-Rossi, N. M., Martins, E. C., Meidanis, J., Menck, C. F. M., Miyaki, C. Y., Moon, D. H., Moreira, L. M., Novo, M. T. M., Okura, V. K., Oliveira, M. C., Oliveira, V. R., Pereira, H. A., Rossi, A., Sena, J. A. D., Silva, C., de Souza, R. F., Spinola, L. A. F., Takita, M. A., Tamura, R. E., Teixeira, E. C., Tezza, R. I. D., de dos Santos, M., Truffi, D., Tsai, S. M., White, F. F., Setubal, J. C. and Kitajima, J. P. 2002. Comparison of the genomes of two
Xanthomonas pathogens with differing host specificities.
Nature. 417:459-463.
Darling, A. C. E., Mau, B., Blattner, F. R. and Perna, N. T. 2004. Mauve: multiple alignment of conserved genomic sequence with rearrangements. G.
enome Res. 14:1394-1403.
Desai, D., Li, J.-H., de Jong, E., Braun, R., Pitman, A., Visnovsky, S., Hampton, J. and Christey, M. 2015. Draft genome sequences of two New Zealand
Xanthomonas campestris pv.
campestris isolates, ICMP 4013 and ICMP 21080.
Genome Announc. 3:e01247-15.
Fargier, E. and Manceau, C. 2007. Pathogenicity assays restrict the species
Xanthomonas campestris into three pathovars and reveal nine races within
X. campestris pv.
campestris.
Plant Pathol. 56:805-818.
Grimm, R. and Vogelsanger, J. eds. by Z. Klement, 1989. Black rot disease on cabbage, irrigation and spreading. In: Proceeding of the 7th International Conference on Plant Pathogenic Bacteria, Akademiai Kiado, Budapest, Hungary. 225-229.
Jakubowski, S. J., Krishnamoorthy, V., Cascales, E. and Christie, P. J. 2004.
Agrobacterium tumefaciens VirB6 domains direct the ordered export of a DNA substrate through a type IV secretion system.
J. Mol. Biol. 341:961-977.
Jensen, B. D., Vicente, J. G., Manandhar, H. K. and Roberts, S. J. 2010. Occurrence and diversity of
Xanthomonas campestris pv.
campestris in vegetable
Brassica fields in Nepal.
Plant Dis. 94:298-305.
Kamoun, S., Kamdar, H. V., Tola, E. and Kado, C. I. 1992. Incompatible interactions between crucifers and
Xanthomonas campestris involve a vascular hypersensitive response: role of the hrpK locus.
Mol. Plant-Microbe Interact. 5:22-33.
Kim, B. S. 1986. Testing for detection of Xanthomonas campestris pv. campestris in crucifer seeds and seed disinfection. Korean J. Plant Pathol. 2:96-101.
King, E. O., Ward, M. K. and Raney, D. E. 1954. Two simple media for the demonstration of pyocyanin and fluorescin.
J. Lab. Clin. Med. 44:301-307.
Leite, R. P. J, Minsavage, G. V., Bonas, U. and Stall, R. E. 1994. Detection and identification of phytopathogenic
Xanthomonas strains by amplification of DNA sequences related to the hrp genes of
Xanthomonas campestris pv.
vesicatoria.
Appl. Environ. Microbiol. 60:1068-1077.
Lema, M., Cartea, M. E., Sotelo, T., Velasco, P. and Soengas, P. 2012. Discrimination of
Xanthomonas campestris pv.
campestris races among strains from northwestern Spain by
Brassica spp. genotypes and rep-PCR.
Eur. J. Plant Pathol. 133:159-169.
Lin, Y.-H., Chang, J.-Y., Liu, E.-T., Chao, C.-P., Huang, J.-W. and Chang, P.-F. L. 2009. Development of a molecular marker for specific detection of
Fusarium oxysporum f. sp.
cubense race 4.
Eur. J. Plant Pathol. 123:353-365.
Liu, Y.-C., Wang, S.-C., Yu, Y.-J., Fung, K.-M., Yang, M.-T., Tseng, Y.-H., Tsai, S.-F., Sun, H. S., Lyu, P.-C. and Chou, S.-H. 2015. Complete genome sequence of
Xanthomonas campestris pv.
campestris strain 17 from Taiwan.
Genome Announc. 3:e01466-15.
Luongo, L., Vitale, S., Haegi, A. and Belisario, A. 2012. Development of SCAR markers and PCR assays for Fusarium oxysporum f. sp. melonis race 2-specific detection. J. Plant Pathol. 94:193-199.
Massomo, S. M. S., Nielsen, H., Mabagala, R. B., Mansfeld-Giese, K., Hockenhull, J. and Mortensen, C. N. 2003. Identification and characterisation of Xanthomonas campestris pv. campestris strains from Tanzania by pathogenicity tests, Biolog, rep-PCR and fatty acid methyl ester analysis. Eur. J. Plant Pathol. 109:775-789.
Park, H. G. 2006. Genetical improvement of
Brassica in Korea.
Acta Hortic. 706:31-48.
Qian, W., Jia, Y., Ren, S.-X., He, Y.-Q., Feng, J.-X., Lu, L.-F., Sun, Q., Ying, G., Tang, D.-J., Tang, H., Wu, W., Hao, P., Wang, L., Jiang, B.-L., Zeng, S., Gu, W.-Y., Lu, G., Rong, L., Tian, Y., Yao, Z., Fu, G., Chen, B., Fang, R., Qiang, B., Chen, Z., Zhao, G.-P., Tang, J.-L. and He, C. 2005. Comparative and functional genomic analyses of the pathogenicity of phytopathogen
Xanthomonas campestris pv.
campestris.
Genome Res. 15:757-767.
Roux, B., Bolot, S., Guy, E., Denancé, N., Lautier, M., Jardinaud, M.-F., Saux, M., Portier, P., Jacques, M.-A., Gagnevin, L., Pruvost, O., Lauber, E., Arlat, M., Carrère, S., Koebnik, R. and Noël, L. D. 2015. Genomics and transcriptomics of
Xanthomonas campestris species challenge the concept of core type III effectome.
BMC Genomics. 16:975
Rubel, M. H., Robin, A. H. K., Natarajan, S., Vicente, J. G., Kim, H.-T., Park, J.-I. and Nou, I.-S. 2017. Whole-genome realignment facilitates development of specific molecular markers for races 1 and 4 of
Xanthomonas campestris pv.
campestris, the cause of black rot disease in
Brassica oleracea.
Int. J. Mol. Sci. 18:2523
Saha, P., Kalia, P., Sharma, M. and Singh, D. 2016. New source of black rot disease resistance in
Brassica oleracea and genetic analysis of resistance.
Euphytica. 207:35-48.
Schaad, N. W. and Alvarez, A. eds. by J. G. Swings and E. L. Civerolo, 1993. Xanthomonas campestris pv. campestris: cause of black rot of crucifers. In: Xanthomonas, Chapman and Hall, London, UK. 51-55.
Singh, D., Raghavendra, B. T., Singh, P., Singh, H., Raghuwanshi, R. and Singh, R. P. 2014. Detection of black rot disease causing pathogen
Xanthomonas campestris pv.
campestris by bio-PCR from seeds and plant parts of cole crops.
Seed Sci. Technol. 42:36-46.
Soengas, P., Hand, P., Vicente, J. G., Pole, J. M. and Pink, D. A. C. 2007. Identification of quantitative trait loci for resistance to
Xanthomonas campestris pv.
campestris in
Brassica rapa.
Theor. Appl. Genet. 114:637-645.
Song, E.-S., Kim, S.-Y., Noh, T.-H., Cho, H., Chae, S.-C. and Lee, B.-M. 2014. PCR-based assay for rapid and specific detection of the new
Xanthomonas oryzae pv.
oryzae K3a race using an AFLP-derived marker.
J. Microbiol. Biotechnol. 24:732-739.
Thieme, F., Koebnik, R., Bekel, T., Berger, C., Boch, J., Büttner, D., Caldana, C., Gaigalat, L., Goesmann, A., Kay, S., Kirchner, O., Lanz, C., Linke, B., McHardy, A. C., Meyer, F., Mittenhuber, G., Nies, D. H., Niesbach-Klösgen, U., Patschkowski, T., Rückert, C., Rupp, O., Schneiker, S., Schuster, S. C., Vorhölter, F.-J., Weber, E., Pühler, A., Bonas, U., Bartels, D. and Kaiser, O. 2005. Insights into genome plasticity and pathogenicity of the plant pathogenic bacterium
Xanthomonas campestris pv.
vesicatoria revealed by the complete genome sequence.
J. Bacteriol. 187:7254-7266.
Vicente, J. G., Conway, J., Roberts, S. J. and Taylor, J. D. 2001. Identification and origin of
Xanthomonas campestris pv.
campestris races and related pathovars.
Phytopathology. 91:492-499.
Vicente, J. G. and Holub, E. B. 2013.
Xanthomonas campestris pv.
campestris (cause of black rot of crucifers) in the genomic era is still a worldwide threat to brassica crops.
Mol. Plant Pathol. 14:2-18.
Giraldo, A. M., Sivanesan, D., Carle, A., Paschos, A., Smith, M. A., Plesa, M., Coulton, J. and Baron, C. 2012. Type IV secretion system core component VirB8 from Brucella binds to the globular domain of VirB5 and to a periplasmic domain of VirB6.
Biochemistry. 51:3881-3890.
Vorhölter, F.-J., Schneiker, S., Goesmann, A., Krause, L., Bekel, T., Kaiser, O., Linke, B., Patschkowski, T., Rückert, C., Schmid, J., Sidhu, V. K., Sieber, V., Tauch, A., Watt, S. A., Weisshaar, B., Becker, A., Niehaus, K. and Pühler, A. 2008. The genome of
Xanthomonas campestris pv.
campestris B100 and its use for the reconstruction of metabolic pathways involved in xanthan biosynthsis.
J. Biotechnol. 134:33-45.
Wang, B., Hu, X., Li, Q., Hao, B., Zhang, B., Li, G. and Kang, Z. 2010. Development of race-specific SCAR markers for detection of Chinese races CYR32 and CYR33 of
Puccinia striiformis f . sp.
tritici. Plant Dis. 94:221-228.
Williams, P. H. 1980. Black rot: a continuing threat to world crucifers.
Plant Dis. 64:736-742.
Yuen, G. Y., Alvarez, A. M., Benedict, A. A. and Trotter, K. J. 1987. Use of monoclonal antibodies to monitor the dissemination of
Xanthomonas campestris pv.
campestris.
Phytopathology. 77:366-370.
Zaccardelli, M., Campanile, F., Spasiano, A. and Merighi, M. 2007. Detection and identification of the crucifer pathogen,
Xanthomonas campestris pv.
campestris, by PCR amplification of the conserved Hrp/type III secretion system gene
hrcC.
Eur. J. Plant Pathol. 118:299-306.